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2011-May Joint Consortia Meeting

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ENCODE wiki page with information and documents for the 2011 May Joint Consortia Meeting

Meeting Documents

Monday, May 23

modENCODE_DCC_Challenges.pdf Lincoln Stein
ENCODE_DCC_Challenges.pdf Jim Kent
Scoring ENCODE data quality Bob Thurman
Chromatin signatures of active and silent genes on Drosophila chromosome 4 - a unique regulatory system Nicole Riddle
Long-range interaction networks in the ENCODE pilot regions Amartya Sanyal
Duplicated sequences in non canonical introns: a way to enhance splicing? Sarah Djebali
Elucidating the regulatory code: cell type-specific transcription factor co-associations and gene expression Manoj Hariharan
Profiling the subnucleosomal active chromatin landscape at single base-pair resolution Steven Henikoff

Tuesday, May 24

  • Comparative Analyses
Human/Mouse Michael Snyder
Report back from Joint AWG session Ewan Birney, Manolis Kellis
  • Report back from breakout session #1
Utility of the modENCODE data to the research communities Jason Lieb, Susan Celniker
Utility of the ENCODE data to the research communities

Wednesday, May 25

  • Report back from breakout session #2
Application to disease Kevin White, Michael Snyder
Comparative analysis and data integration Mark Gerstein, Lincoln Stein
Technology development Steven Henikoff, Richard Myers, David MacAlpine
  • Updates from related projects
Common Fund Epigenomics update Peggy Farnham
Common Fund Geneotype-Tissue Expression (GTEx) update Jeff Struewing
29 Mammals and Additional fly/worm species sequence annotation updates Manolis Kellis

mod/ENCODE Consortia Meeting Photo

May 2011 Consortia Photo

PI Production Summaries and DCC Submitted and Released Data

ENCODE

ENCODE Production Summaries
PI Production Summary DCC Submitted/Released Data
Bernstein DCC data
Crawford DCC data
Dekker DCC data
Gingeras DCC data
Hubbard DCC data
Myers DCC data
Snyder DCC data
Stamatoyannopoulos DCC data
Tenenbaum DCC data
Weng DCC data

Mouse ENCODE

Mouse Production Summaries
PI Production Summary DCC Submitted/Released Data
Hardison DCC data
Ren DCC data
Snyder DCC data
Stamatoyannopoulos DCC data

modENCODE

modENCODE Production Summaries
PI Production Summary DCC Submitted/Released Data
Celniker DCC data
Henikoff DCC data
Karpen DCC data
Lai DCC data
Lieb DCC data
MacAlpine DCC data
Piano DCC data
Snyder DCC data
Waterston DCC data
White DCC data