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Please go to the ENCODE3 wiki for current information.

2012-09-21 DCC Progress

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Data Submission and Track Status

The most recent spreadsheet of hg19 submissions as reported by the pipeline automation is: Media:EncodeExperiments.2012-09-20.xlsx.

The human tracks that will be going to public are all there except for CSHL Long. We are working on getting all of this data to GEO.

Tracks released this month on the UCSC public site

  • UNC/BSU ProtGenc (Release 1 ) FINAL
  • AWG Uniform Processing trackHub made into a public hub
  • Duke DnaseI HS (Release 3)
  • SYDH TFBS (Release 3) FINAL
  • HAIB TFBS (Release 3) FINAL
  • Open Chrom TFBS (Release 2)
  • UW DNase DGF (Release 1)
  • Open Chrom FAIRE (Release 2)

Tracks currently under review by the DCC quality group

  • CSHL Long RNA-seq (Release 3) FINAL

The complete list of released ENCODE tracks

Mouse ENCODE

Data Submissions and Track Status

The latest spreadsheet of Mouse ENCODE experiments submitted to the DCC is: Media:MouseExperiments.2012-09-20.xlsx.

The UW Dnase HS track is the last mouse track to go to public. We are working on getting the data to GEO as well.

Tracks released this month on the UCSC public site

  • CSHL Long RNA-seq (Release 3)
  • LICR Histone (Release 3) FINAL
  • SYDH Histone (Release 2) FINAL

Tracks currently under review by the DCC quality group

  • UW DNaseI HS (Release 2)


The complete list of ENCODE data at GEO

ENCODE and modENCODE Data Listings


Other

Much progress has been made toward submitting antibody validations. Thank you all for your help.