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Genome variation

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Cat-herder - Gavin Sherlock

Resources for Variation

  1. Hudson Alpha is going to genotype hESC, Huvecs and Keratinocytes
    1. (will update when we know more)
  2. GM12878. This is present in the 1,000 genomes pilot 2 release at [[1]], README [[2]]

(We use the Pilot 2 data because Pilot 2 is the deep coverage of trios. GM12878 is the child in the European trio and this dataset is the best dataset on this individual. GM12878 and GM12891 and GM12892 are present in the other pilots, but the quality is not as good as it's inclusion in Pilot 1 (low coverage) and Pilot 3 (exome sequencing) is really to test those pilots vs Pilot 2).


MyersLab Update on Allele-specific events

Teleconference Agendas/Minutes

Agenda for March 2 2011

Agenda for Oct 13

Agenda for Sept 28

Agenda for Sept 8

Agenda for June 21

Agenda for June 16 Minutes

Agenda for April 30

Agenda/Minutes of April 12

March 1st Agenda

08-02-2010 Agenda

01-02-2010 Agenda

23-04-2009 Agenda

23-06-2009 Minutes


  • Needed from presentation



  • Other pages