NOTE! This is a read-only copy of the ENCODE2 wiki.
Please go to the ENCODE3 wiki for current information.
January 2010 Data Freeze
This section is for scheduling approval teleconferences for data submitted during the freeze. Labs are urged to carefully review their data in the browser as soon as they are notified by their wrangler that it is ready for review. Review should focus on data quality, completeness, and metadata correctness (not cosmetics of browser display). During the call, the status of each dataset (approved for analysis or else revoked) will be finalized (a spreadsheet will be provided for this purpose).
These calls should be scheduled for the week of January 25 - 29. Labs should fill in their proposed times and emails for their attendees in the table below by January 20.
|Lab||Wrangler||Lab approver(s)||Dates/times proposed by lab||Scheduled date/time||Results|
|Broad||Tim||Noam Shoresh, Chuck Epstein||1/25 3-4:30pm; 1/26 1-3:30pm; 1/27 3-4:30pm; 1/29 1-3pm||Wednesday 1/27 12-1pm PST (3-4pm EST)||All submissions approved|
|Duke||Tim, Brian, Melissa||Terry Furey||1/25 2:30-4:30pm EST; 1/27 3-4:30pm EST||Monday 1/25 11:30am-12:30pm PST (2:30-3:30pm EST)|| All submissions approved.|
Three cell protocols await approval
Minor display issues TBD.
Sep 2009 peaks to be versioned.
|Caltech||Brian||Georgi Marinov||1/27 1pm PST||Wednesday 1/27 1pm PST (4pm EST)||All January data accepted, labeling issues resolved (hopefully)|
|HudsonAlpha||Tim, Brian||Flo Pauli (HudsonAlpha), Rami Rauch (Stanford)||1/26 1-5PM CST||Tuesday 1/26 1-2pm PST (3-4pm CST)|| All submissions approved except:|
Methyl Seq GM cells: flipped methyl/non (revoked)
Minor cosmetics: long label, signal settings, low score peaks
|BU and NHGRI||Brian||Tom Tullius (BU), Steve Parker (NHGRI)||1/27 1-5PM EST; 1/28 1-4PM EST||11am PST on 1/28 Thursday (2pm EST)||Approved. Needs new labels and splitting of content|
|Transcriptome||Brian||Carrie Davis (CSHL)||1/27 12:20 EST||1/27 12:30 EST||All January Freeze Submissions approved|
|UMass-Dekker||Kate||Bryan Lajoie||1/26 11am-3pm EST, 1/28 11am-3pm EST||12:30 EST on January 28||January freeze submissions approve|
|UW||Tim, Brian, Krish||John, Raj, Richard||1/29 1-5 PM||Friday 1/29: 1/29 1-2pm PST|| All submissions approved.|
No ChIP Inputs, GM12878 and Jurkat replicates need resolving
3 display issues and 2 grouping issues to resolve
|Yale||Tim||Steve Landt, Phil LaCroute, Mike Wilson||1/26 10-12 PST||Tuesday 1/26 10-11am PST (1-2pm EST)|| AG cell lines tied to missing IgG-rab. (using IgG-mus: approved)|
HUVEC submissions have no paired controls (revoked)
HeLa-S3/Brg-1/IgG-mus wrong data (revoked)
All other submissions approved.
Submissions in January 2010 Data Freeze
The following google spreadsheet shows all successful data submissions for the Jan 2010 freeze, as reported by the DCC pipeline.
This spreadsheet summarizes progress of submissions for the current freeze.