NOTE! This is a read-only copy of the ENCODE2 wiki.
Please go to the ENCODE3 wiki for current information.

Old News

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After 2010, news from the DCC can be found in the DCC Monthly Status updates.

March 18, 2010 -- ENCODE/modENCODE Usability Survey posted at UCSC site.

March 15, 2010 -- Data submission pipeline re-opened, supporting human hg19/GRCh37 and mouse mm9 reference genomes

March 11, 2010 -- Histone Modifications by Univ. Washington ChIP-seq released to public server. ENCODE usage scenarios posted to wiki -- all are invited to contribute.

March 5, 2010 -- HudsonAlpha Methyl-seq (release 2) released to public server.

February 26, 2010 -- Gencode Gene Annotations released to public server.

February 26, 2010 -- Cold Spring Harbor Labs Small RNA-seq released to public server.

February 3, 2010 -- Univ. Washington DNaseI Hypersensitivity by Digital DNaseI released to public server.

December 18, 2009 -- Histone Modifications by Broad Institute ChIP-seq released to public server.

December 18, 2009 -- Caltech RNA-seq Map Algorithm released to public server.

December 17, 2009 -- Cold Spring Harbor Labs Long RNA-seq released to public server.

December 4, 2009 -- Open Chromatin, Duke/UNC/UT released to public server.

November 30, 2009 -- RIKEN RNA Subcellular Localization by CAGE Tags released to public server.

October 14, 2009 -- Transcription Factor Binding Sites by ChIP-seq from Yale/UC-Davis/Harvard released to public server.

October 2, 2009 -- Affymetrix/CSHL Subcellular RNA Localization by Tiling Array additional data (4 datasets in GM12878 and HepG2) released to public server.

September 24, 2009 -- NHGRI Elnitsiki Negative Regulatory Elements released to public server.

September 15, 2009 -- Univ. Washington Affy All Exon Arrays released to public server.

September 11, 2009 -- Univ. Washington DNaseI Hypersensitivity by Digital DNaseI, HudsonAlpha MethylSeq, HudsonAlpha CpG Methylation by Illumina Methyl27, and Common Cell-Type Copy Number Variation tracks released to public server.

August 13, 2009 -- RIKEN RNA Subcellular Localization by CAGE Tags: PolyA- in K562 nucleus and cytosol, PolyA- in prostate whole cell released to public server. TAF1 label corrected in HudsonAlpha CHIP-seq.

August 11, 2009 -- Cold Spring Harbor Labs Long RNA-seq (K562) released to public server

July 30, 2009 -- NHGRI Elnitski Bi-directional Promoters released to public server

July 28, 2009 -- Helicos RNA-seq (K562) released to public server

July 24, 2009 -- Mapability or Uniqueness of Reference Genome released to public server

July 6, 2009 -- Affymetrix/CSHL Subcellular RNA Localization by Tiling Array released to public server

June 26, 2009 -- Open Chromatin, Duke/UNC/UT released to public server

June 9, 2009 -- RIKEN RNA Subcellular Localization by CAGE Tags released to public server

June 5, 2009 -- HudsonAlpha Transcription Factor Binding Sites by ChIP-seq released to public server

May 8, 2009 -- Gencode Gene Annotations released to public server

April 8, 2009 -- SUNY Albany RNA Binding Proteins by RIP-chip released to public server

April 3, 2009 -- Histone Modifications by Broad Institute ChIP-seq released to public server

March 13, 2009 -- Transcription Factor Binding Sites by ChIP-seq from Yale/UC-Davis/Harvard released to public server

March 9, 2009 -- The spreadsheet of datasets that have been submitted to the DCC for the November 2008 and November 2009 data freezes has been updated, and is available here.

January 13, 2009 -- The ENCODE pipeline and UCSC test browser will be off-line on Monday, January 19 for a hardware upgrade. The pipeline will be brought down on Sunday and the Consortium will be notified when it is again available (anticipated Tuesday afternoon).

October 17, 2008 -- The DCC progress report for this month is available at 2008-10-17 DCC Progress. This and future reports can be accessed via the DCC link in the projects section of the left sidebar.

September 19, 2008 -- This wiki will be off-line from 3pm to 4pm PST due to a software upgrade.

June 30, 2008 -- A data menu box has been added to the left sidebar to accomodate links to pages related to data submission.

June 25, 2008 -- Presentations from the June 2008 ENCODE Consortium meeting in Rockville are now available.

June 23, 2008 -- A Software Resources page has been added for listing the sequence aligners, peak callers, and other software used for ENCODE data analysis and management. Please use this page to enter the software resources in use by your project. To access, click the Software link in the common resources section of the left sidebar.

April 20, 2008 -- A calendar for tracking ENCODE activities has been added. To access it, click the Activities link in the community section of the left sidebar. The Calls and Meetings links have been moved from the sidebar to the new Activities page. -->